Yilong Zou, Ph.D.

School of Life Sciences

The Laboratory of Functional Lipidomics and Metabolic Regulation

CONTACT

Email: zouyilong@westlake.edu.cn

Website: https://yilongzou-lab.com

Yilong Zou, Ph.D.

School of Life Sciences

The Laboratory of Functional Lipidomics and Metabolic Regulation

CONTACT

Email: zouyilong@westlake.edu.cn

Website: https://yilongzou-lab.com

“To be a scientist, you do not have to be a genius. Unleash and follow your curiosity, then be bold, be professional. I believe many seminal discoveries will emerge from the Westlake community.”

Biography

Dr. Zou received his Bachelor's degree from the Department of Biological Sciences and Biotechnology in Tsinghua University, Beijing, China in 2009. After a gap year working as a Research Assistant in Dr. Li Yu's group also in Tsinghua University, he joined the Gerstner Sloan Kettering Graduate School of Biomedical Sciences at Memorial Sloan Kettering Cancer Center, New York, USA to pursue his Ph.D. In graduate school, he worked with Dr. Joan Massagué on mechanisms of pluripotent stem cell differentiation and cancer metastasis. In 2016, Dr. Zou obtained his Ph.D. degree and then started his postdoctoral training in the Chemical Biology and Therapeutics Science Program at the Broad Institute of MIT and Harvard and the Department of Chemistry and Chemical Biology at Harvard University, Cambridge, Massachusetts, USA, under the mentorship of Dr. Stuart L. Schreiber. Dr. Zou’s research is published in Nature (in press), Nature Chemical Biology, Cell Stem Cell, Nature Communications, Genes&Development, and other journals. 


Awards

2020     NIH Pathway-to-Independence K99/R00 award

2019     Broad Institute Shark Tank award

2012     The Grayer Fellowship, Memorial Sloan Kettering Cancer Center

2009     Undergraduate Research Excellence Award, first prize, School of Life Sciences, Tsinghua University

2009   International Genetically Engineered Machine (iGEM) competition, MIT, bronze award (team leader of Tsinghua University)

2008     'Star of Science' in undergraduates, Tsinghua University   

 

Research

We are an interdisciplinary research group that is broadly interested in understanding how the chemical nature of cellular metabolites support their specific biological functions. Our current focus is to study the role of lipid metabolism in mammalian development and diseases including cancer and organ degeneration. 


The cellular lipidome contains a wide spectrum of structurally distinct lipids and collectively plays important roles in every aspect of cellular functions including membrane compartmentalization, signal transduction and energy homeostasis. Dysregulation of lipid metabolism is implicated in a large number of human diseases including obesity, neurodegeneration, cancer, and various organ failure.

 

While most cellular lipids contain multiple chemically reactive groups hence simultaneously belong to multiple lipid classes, there is a major gap in our understanding about what chemical properties of each lipid are contributing to a specific cellular activity and how. As a result, our knowledge about how cells organize and regulate their lipidome in response to developmental and environmental cues, and how the lipidome in turn supports cell type-specific structure and function remains scarce. Addressing these critical questions will help establish the missing link between the cellular lipidome and the genetic information flow (DNA/RNA/protein), and accelerate our therapeutic development against lipid metabolism-related diseases.

 

In our group, we integrate molecular, cellular, genetic, system and chemical biology approaches to discover novel lipid molecules and pathways, and identify novel therapeutic targets and drug candidates for treating human diseases associated with lipid dysregulation. Specifically, we are actively pursuing the following research directions:


1. Understanding and targeting ferroptosis in human diseases

In the past few years, the field has made rapid progress in understanding the biochemical basis of ferroptosis, developing chemical tools for reporting this cell death pathway, and identifying ferroptosis-relevant disease contexts. However, key questions remain before the power of ferroptosis-targeting strategies can be utilized to treat human diseases:

1) What is the chemical basis of lipid peroxidation and what is its physiological role in normal tissues?

2) What are the death-executing molecules or events caused by lipid peroxidation, and what types of membrane damage are necessary or sufficient to cause cell death?

3) What are the genes and pathways involved in executing lipid peroxidation? Can we target such proteins to control cellular lipid peroxidation levels?

4) What are the physiological roles of ferroptotic cell death in early development, adulthood and aging, respectively?


2. Constructing a Mammalian Lipidome Atlas to understand lineage-specific roles of the lipidome

Our prior research highlighted that cellular differentiation, tumor progression and acquisition of therapy resistance are coupled with significant changes in the cellular lipid composition, making a compelling case that the cellular lipidome exhibits a high degree of plasticity and is highly responsive to cell state transitions. Nonetheless, few cell type-specific lipid pathways have been identified despite the vast diversity of the chemical structures of cellular lipids. To accelerate the discovery of such lipids, we are developing a comprehensive “Mammalian Lipidome Atlas” (MLA) in major human and mouse cell types at representative developmental and aging stages. I envision that more novel functional lipid classes and pathways, like plasmalogens, triacylglycerides and cholesterols, will emerge from this analysis.


3. Decoding the contribution of lipid metabolism in tumorigenesis and metastasis

The development of metastatic disease accounts for >90% of cancer-associated mortality, yet few biological pathways can be exploited to inhibit metastasis. While previous studies have largely focused on the signaling and cytoskeleton changes required for metastasis such as epithelial-mesenchymal transitions (EMT), the membrane compositional changes required for supporting the enhanced motility and invasiveness of metastatic cells have not been fully examined. We are using mouse models and human patient tumor samples to investigate the molecular basis of cancer metastasis formation. We envision these studies will illuminate the membrane configurations required for supporting the enhanced motility and invasiveness of metastatic cells – an understudied aspect in metastasis research.

At the same time, we are interested in developing novel tools and technologies for detecting unique lipid species, and identifying new therapeutic modalities for targeting lipid metabolism related human diseases.


To empower efficient lipid characterizations, my lab will be actively engaged in developing novel probes and techniques for tracing, visualizing and quantifying specific lipids in vitro and in vivo. Moreover, other research areas in the lab will likely nominate novel metabolic pathways for therapeutic intervention in disease settings. Once an attractive target pathway is identified, we will integrate various chemical biology approaches, including high-throughput phenotypic screening, targeted protein degradation, and DNA-encoded small molecule screening, to develop therapeutic modalities. In addition to small molecule inhibitors, our lab is also interested in other therapeutic modalities including gene therapy and bioactive peptides. Currently, we are focusing on developing small molecule activators and inhibitors of ferroptosis for in vitro and in vivo use.

 

To learn more about our research, please visit: https://www.yilongzou-lab.com/research


 

Highlighted Publications:

1. Zou Y*,#, Henry WS*, Ricq EL*, Graham ET, Maretich P, Paradkar S, Phadnis VV, Boehnke N, Deik AA, Reinhardt F, Eaton JK, Ferguson B, Wang W, Fairman J, Keys H, Dančík V, Clish CB, Clemons PA, Hammond PT, Boyer LA, Weinberg RA#, and Schreiber SL#. Plasticity in polyunsaturated ether-phospholipids promote ferroptosis susceptibility and evasionNature (in press) (*co-first author, #co-corresponding author)

2. Zou Y*,#, Graham ET*, Huang Y, Salman W, Yu L and Schreiber SL#. PALP: An imaging method for detecting and quantifying polyunsaturated phospholipids via peroxidation. bioRxiv. (also in revision for Journal of Lipid Research) doi: https://doi.org/10.1101/2020.04.11.037218 (*co-first author, #co-corresponding author)

3. Zou Y* & Schreiber SL*. Progress in understanding ferroptosis and challenges in its targeting for therapeutic benefit. Cell Chemical Biology 2020 April; 27(4): 463-471. (Perspective) (*co-corresponding author).   

4. Zou Y*,#, Li H*, Graham ET, Deik AA, Eaton JK, Wang, Sandoval-Gomez G, Clish, Doench JG, & Schreiber SL#. Cytochrome P450 oxidoreductase contributes to phospholipid peroxidation in ferroptosis. Nature Chemical Biology 2020 Mar;16(3):302-309.  PMID: 32080622.

(*co-first author, #co-corresponding author)

5. Zou Y, Palte MJ, Deik AA, Li H, Eaton JK, Wang W, Tseng Y-Y, Deasy R, Alimova M, Dančik V, Leshchiner ES, Viswanathan VS, Signoretti S, Choueiri TK, Boehm JS, Wagner BK, Doench J, Clish CB, Clemons PA, and Schreiber SL. A GPX4-dependent cancer cell state underlies the clear-cell morphology and confers sensitivity to ferroptosis. Nature Communications 2019 Apr 8;10(1):1617. PMID: 30962421. doi: https://doi.org/10.1038/s41467-019-09277-9

6. Wang Q*, Zou Y*, Nowotschin S, Li Q, Soh C-L, Kim SY, Xi Q, Zhang C, Su J, Shu W, Huangfu D, Hadjantonakis A-K and Massagué J.  The p53 family coordinates Wnt and Nodal Inputs for mesendoderm differentiation of embryonic stem cells. Cell Stem Cell 2017 Jan 5;20(1):70-86. https://doi.org/10.1016/j.stem.2016.10.002. PMID: 27889317. (*Co-first author)

7. Aragón A*, Wang Q*, Zou Y*, Morgani SM, Ruiz L, Kaczmarska Z, Su J, Torner C, Tian L, Hu J, Shu W, Agrawal S, Márquez JA, Hadjantonakis A-K, Macias MJ, and Massagué J. Structural basis for distinct roles of SMAD2 and SMAD3 in FOXH1 pioneer directed TGF-β signaling. Genes&Development 2019 Nov 1;33(21-22):1506-1524. doi:10.1101/gad.330837.119. (*co-first author, listed in alphabetical order.)


Contact

Email: zouyilong@westlake.edu.cn 

We have several open positions for postdocs, graduate students and research assistants. Our lab is committed to training the next generation of scientists. We endeavor to provide an innovative, rigorous, and collegial research environment for our trainees, and offer continuous support for the career growth of young scientists. 

Please visit https://www.yilongzou-lab.com/join-us-1 for more information.