1. Fang, G. Q., Yuan, D., Lyu, X. Y., Yin, C. Q., Song, J., Zhang, Y., Zhong, J., Shen, E. Z.,& Song CQ*. Boosting prime editing with engineered non-canonical pegRNAs. Nature Biomedical Engineering. In press

2. Huang, X. Y.^#, Yang, D.^#, Liu, Y.^# et al., Shi, J., & Song, CQ*. SETDB1 promotes mammalian liver regeneration by stimulating cytokine CSF3 in hepatocytes. Cell Reports, 2025, 44(6).

3. Li, Z.^#, Li, Z.^#, Zhang, Y., et al, Zhang, Z., Song, CQ*, Wu, J.*, & Shen, E. Z.* (2024). Mammalian PIWI–piRNA–target complexes reveal features for broad and efficient target silencing. Nature Structural and Molecular Biology, 2024, 31(8), 1222–1231.

4. Lyu XY^#, Deng Y^#, Huang XY^#, Li ZZ^#, Fang GQ, Yang D, Wang FL, Kang W, Shen E.Z*, Song CQ*, CRISPR FISHer enables high-sensitivity imaging of nonrepetitive DNA in living cells through phase separation-mediated signal amplification, Cell Research, 2022. (Sanofi-Cell Research outstanding paper award)

5. Yin, C. Q., & Song CQ*. Tumor Intrinsic Immunogenicity Suppressor SETDB1 Worsens the Prognosis of Patients with Hepatocellular Carcinoma. Cells, 2024,13(24).

6. Yang, D., Song, CQ*. The Delivery of ABE mRNA to the Adult Murine Liver by Lipid Nanoparticles (LNPs). In: Bae, S., Song, B. (eds) Base Editors. Methods in Molecular Biology, vol 2606. 2023

7. Fu XW, Song CQ*. Identification and Validation of Pyroptosis-Related Gene Signature to Predict Prognosis and Reveal Immune Infiltration in Hepatocellular Carcinoma. Frontiers in Cell and Developmental Biology, 2021, 9:748039

8. Wu S^#, Li Q^#, Yin C, Xue W^＊, Song CQ*. Advances in CRISPR/Cas-based Gene Therapy in Human Genetic Diseases. Theranostics, 2020 10:4374-4382

9. Song CQ^#, Jiang T^#, et al. Adenine base editing in an adult mouse model of tyrosinemia. Nature Biomedical Engineering. 2020. 4:125–130 (F1000)

10. Yin H ^#, Song CQ^#, et al. Partial DNA-guided Cas9 enables genome editing with reduced off-target activity. Nature Chemical Biology. 2018;14(3):311-316.

11. Song CQ^#, Li Y^#, et al. Genome-Wide CRISPR Screen Identifies Regulators of Mitogen-Activated Protein Kinase as Suppressors of Liver Tumors in Mice. Gastroenterology. 2017;152(5):1161-1173.e1.

12. Song CQ, et al. In vivo genome editing partially restores alpha1-antitrypsin in a murine model of AAT deficiency. Human Gene Therapy. 2018;29(8):853-860. (Cover of the journal) (F1000)

13. Song CQ, Xue W. CRISPR-Cas-related technologies in basic and translational liver research. Nature Reviews Gastroenterology & Hepatology. 2018;15(5):251-252.

14. Yin H, Song CQ, et al. Structure-guided chemical modification of guide RNA enables potent non-viral in vivo genome editing. Nature Biotechnology. 2017;35(12):1179-1187.

15. Yin H, Song CQ, et al. Therapeutic genome editing by combined viral and non-viral delivery of CRISPR system components in vivo. Nature Biotechnology. 2016;34(3):328-33.

16. Shen EZ^#, Song CQ^#, Lin Y^#, et al. Mitoflash frequency in early adulthood predicts lifespan in Caenorhabditis elegans. Nature. 2014;508(7494):128-32.

17. Liu C^#, Song CQ^#, et al. pQuant improves quantitation by keeping out interfering signals and evaluating the accuracy of calculated ratios. Analytical Chemistry. 2014;86(11):5286-94.

All the publications can be accessed through Google Scholar:

https://scholar.google.com/citations?user=SYrvfr0AAAAJ&hl=en