Full list of publication：https://scholar.google.com/citations?user=k7tt13cAAAAJ&hl=zh-CN

(1) Environmental Microbiome Assembly and Function Mechanism

1. Ze Zhao, Han Gao, Yuyi Yang, Ye Deng, Feng Ju*. 2025. Fungi as A Critical Component of Lake Microbiota in Response to Cyanobacterial Harmful Algal Blooms. Environmental Science & Technology. 59(22): 11167-11180

2. Ze Zhao, Wei Qin, Ling Li, Heping Zhao, Feng Ju*. 2024. Discovery of Candidatus Nitrosomaritimum as a New Genus of Ammonia-Oxidizing Archaea Widespread in Anoxic Saltmarsh Intertidal Aquifers. Environmental Science & Technology. 58(36):16040-16054

3. Ze Zhao, Lu Zhang, Guoqing Zhang, Han Gao, Xiaogang Chen, Ling Li, Feng Ju*. 2023. Hydrodynamic and anthropogenic disturbances co-shape microbiota rhythmicity and community assembly within intertidal groundwater-surface water continuum. Water Research. 242:120236

4. Hui Wang, Yubo Wang, Guoqing Zhang, Ze Zhao, Feng Ju*. 2023. Temporal dynamics and performance association of the Tetrasphaera-enriched microbiome for enhanced biological phosphorus removal. Engineering. 29: 168-178

5. Han Gao, Ze Zhao, Lu Zhang, Feng Ju*. 2022. Cyanopeptides restriction and degradation co-mediate microbiota assembly during a freshwater cyanobacterial harmful algal bloom (CyanoHAB). Water Research. 220.118674

6. Lu Zhang, Wei Yin, Chao Wang, Aijing Zhang, Hong Zhang, Tong Zhang, Feng Ju*. 2021. Untangling microbiota diversity and assembly patterns in the world's largest water diversion canal. Water Research. 117617.

(2) Environmental Resistome Structuring Mechanism and Risk Mitigation

7. Xinyu Zhu, Limin Lin, Feng Ju*. 2025. Tracking mitigation and expression patterns of antibiotic resistant genes during full-scale livestock wastewater treatment: Comparison between summer and winter conditions. Water Research. 287: 124515

8. Jangwoo Lee^#, Feng Ju*^#, Karin Beck, Helmut Bürgmann*. 2023. Differential effects of wastewater treatment plant effluents on the antibiotic resistomes of diverse river habitats. The ISME Journal. 17: 1993-2002 (^#equal contribution)

9. Menglei Shuai #, Guoqing Zhang#, …, Feng Ju*, Jusheng Zheng* et al. 2022. Human gut antibiotic resistome and progression of diabetes. Advanced Science. e2104965 (equal contribution)

10. Zhiguo Zhang, Guoqing Zhang, Feng Ju*. 2022. Using culture-enriched phenotypic metagenomics for targeted high-throughput monitoring of clinically-important fraction of the β-lactam resistome. Environmental Science & Technology. 56(16): 11429-11439

11. Ling Yuan, Yubo Wang, Lu Zhang, Alejandro Palomo, Jizhong Zhou, Barth F Smets, Helmut Bürgmann, Feng Ju*. 2021. Pathogenic and indigenous denitrifying bacteria are transcriptionally active and key multi-antibiotic resistant players in wastewater treatment plants. Environmental Science & Technology. 55(15): 10862-10874

12. Feng Ju, Karin Beck, Xiaole Yin, Andreas Maccagnan, Christa S McArdell, Heinz P Singer, David R Johnson, Tong Zhang, Helmut Bürgmann*. 2019. Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange and upregulated expression in the effluent. The ISME Journal. 13 (2): 346-360

(3) Microbiome Resource and Technology-Empowered Sustainable Development

13. Yichen Ding, Yunhua Zhang, Yaofeng Zhou, Wujia Mo, Keyi Chen, Feng Ju*. 2026. Precision Insect Control Using Programmable Modular Phage Therapy Platforms. Trends in Biotechnology(In Press).

14. Yunhua Zhang, Wujia Mo, Keyi Chen, Yichen Ding, Kaikai Mao, Hu Wan, Jizhong Zhou, Feng Ju*. 2025. Cooperative Microbial Metabolism Enhances Tryptophan-Mediated Insecticide Detoxification in the Fall Armyworm. The ISME Journal, 1(19): wraf237

15. Guoqing Zhang, Hui Wang, Zhiguo Zhang, Lu Zhang, Guibing Guo, Jian Yang, Fajie Yuan*, Feng Ju*. 2024. Highly accurate classification and discovery of microbial protein-coding gene functions using FunGeneTyper: an extensible deep learning framework. Briefings in Bioinformatics 25 (4): bbae319

16. Lu Zhang, Lingyun Guo, Zhongli Cui, Feng Ju*. 2024. Exploiting predatory bacteria as biocontrol agents across ecosystems. Trends in Microbiology. 32(4):398-409

17. Lu Zhang, Xinyu Huang, Jizhong Zhou, Feng Ju*. 2023. Active predation, phylogenetic diversity, and global prevalence of myxobacteria in wastewater treatment plants. The ISME Journal.17(5):671-681

18. Zhe Zhang, Haoran Peng, Dongchen Yang, Guoqing Zhang, Jinlin Zhang, Feng Ju*. 2022. Polyvinyl chloride degradation by a bacterium isolated from the gut of insect larvae. Nature Communication. 13: 5360