Beard, D.A. and Qian, H. Chemical Biophysics: Quantitative Analysis of Cellular Systems, Cambridge University Press (2008).

葛颢，钱紘，数学动力学模型。北京大学现代数学丛书，北京大学出版社（2017）。

Qian, H. and Ge, H. Stochastic Chemical Reaction Systems in Biology, Springer Lecture Notes on Mathematical Modelling in the Life Sciences, Springer (2021).

1. Jia, C., Qian, H. and Zhang, M.Q. (2024) Analytic theory of stochastic oscillations in single-cell gene expression. SIAM Journal of Applied Mathematics, 84, 1204-1226 (2024).

2. Lu, Z. and Qian, H. Emergence and breaking of duality symmetry in generalized fundamental thermodynamic relations. Physical Review Letters, 128, 150603 (2022).

3. Berger, A., Qian, H., Wang, S. and Yi, Y. Intermittent synchronization in finite-state random networks under Markov perturbations. Communications in Mathematical Physics, 384, 1945-1970. (2021).

4. Qian, H. and Kou, S.C. Statistics and related topics in single-molecule biophysics. Annual Review of Statistics and Its Application, 1, 465-492 (2014).

5. Qian, H. Cooperativity in cellular biochemical processes: Noise-enhanced sensitivity, fluctuating enzyme, bistability with nonlinear feedback, and other mechanisms for sigmoidal responses. Annual Review of Biophysics, 41, 179-204 (2012).

6. Cooper, J.A. and Qian, H. A mechanism for Src kinase-dependent signaling by noncatalytic receptors. Biochemistry, 47, 5681-5688 (2008).

7. Qian, H. Phosphorylation energy hypothesis: open chemical systems and their biological functions. Annual Review of Physical Chemistry, 58, 113-142 (2007).

8. Kim, K.H. and Qian, H. Entropy production of Brownian macromolecules with inertia. Physical Review Letters, 93, 120602 (2004).

9. Beard, D.A., Liang, S.-D., and Qian, H. Energy balance for analysis of complex metabolic network. Biophysical Journal, 83, 79-86 (2002).

10. Qian, H. and Murray, J.D. A simple method of parameter space determination for diffusion-driven instability with three species. Applied Mathematics Letters, 14, 405-411 (2001).

11. Doyle, R., Simons, K., Qian, H., and Baker, D. Local interaction and the optimization of protein folding. Proteins: Structure, Function, and Genetics, 29, 282-291 (1997).

12. Qian, H. and Hopfield, J.J. Entropy-enthalpy compensation: Perturbation and relaxation in thermodynamic systems. Journal of Chemical Physics, 105, 9292-9298 (1996).

13. Qian, H. and Schellman, J.A. Helix-coil theories: A comparative study for finite length polypeptides. Journal of Physical Chemistry, 96, 3987-3994 (1992).

14. Scholtz, J.M., Qian, H., York, E.J., Stewart, J.M., and Baldwin, R.L. Parameters of helix-coil transition theory for alanine-based peptides of varying chain lengths in water. Biopolymers, 31, 1463-1470 (1991).

15. Qian, H., Sheetz, M.P., and Elson, E.L. Single particle tracking: Analysis of diffusion and flow in two dimensional systems. Biophysical Journal, 60, 910-921 (1991).

16. Qian, H. and Elson, E.L. Distribution of molecular aggregation by analysis of fluctuation moments. Proceedings of the National Academy of Sciences USA, 87, 5479-5483 (1990).