*These authors contribute equally

1. Zhang, K., Zemke, N. R., Armand, E. J. & Ren, B. A fast, scalable and versatile tool for analysis of single-cell omics data. Nature Methods (2024)

2. Zhang, K.*, Hocker, J. D.*, Miller, M., Hou, X., Chiou, J., Poirion, O. B., ... Ren, B. A single-cell atlas of chromatin accessibility in the human genome. Cell (2021)

3. Zhang, K., Wang, M., Zhao, Y., & Wang, W. Taiji: System-level identification of key transcription factors reveals transcriptional waves in mouse embryonic development. Science Advances (2019)

4. Yu, B.*, Zhang, K.*, Milner, J., Toma, C., Chen, R., Scott-Browne, J., ... Goldrath, A. Epigenetic landscapes reveal transcription factors that regulate CD8+ T cell differentiation. Nature Immunology (2017)

5. Zhang, K., Li, N., Ainsworth, R., & Wang, W. Systematic identification of protein combinations mediating chromatin looping. Nature Communications (2016)